funkyheatmap
is available as a standalone executable.
The data formats are very similar as the underlying R function. Instead
of data frames you should pass TSV files and instead of a named list
(for the palettes) you should pass a yaml file.
Install
wget https://github.com/funkyheatmap/funkyheatmap/releases/latest/download/nextflow.zip
unzip nextflow.zip -d funky_heatmap
In order for this to work, you need to have Docker and Bash installed (nothing else).
View help
Run --help
to get more information on the arguments of
funky heatmap.
nextflow run funky_heatmap/main.nf --help
Example
We also processed the mtcars
dataset and stored it as a
tsv file. To generate a plot with it, use the following commands:
nextflow run funky_heatmap/main.nf \
--data funky_heatmap/example_data.tsv \
--output plot.pdf \
--publish_dir . \
-profile docker
More information
See the funkyheatmap home page for more information and documentation.