funkyheatmap
is available as a standalone executable.
The data formats are very similar as the underlying R function. Instead
of data frames you should pass TSV files and instead of a named list
(for the palettes) you should pass a yaml file.
Install
wget https://github.com/funkyheatmap/funkyheatmap/releases/latest/download/nextflow.zip
unzip nextflow.zip -d funky_heatmap
In order for this to work, you need to have Docker and Bash installed (nothing else).
Example
We also processed the mtcars
dataset and stored it as a
tsv file. To generate a plot with it, use the following commands:
More information
See the funkyheatmap home page for more information and documentation.